Biochemical Soul Musings on Nature, Science, Evolution, Biology, and Education

25Mar/09Off

Adaptation of the Week – Channichthyidae Icefish Blood and Antifreeze

I owe the following example of evolutionary adaptation to the always amazing evolutionary and developmental biologist Dr. Sean B. Carroll, from his lecture "Making of the Fittest" for the Darwin College - Darwin Lecture Series, available at iTunes U (I highly recommend everyone give it a listen).

The Red Blood Cell-less Icefish © Dr Julian Gutt and Alfred Wegener Institute

The Red Blood Cell-less Icefish © Dr Julian Gutt and Alfred Wegener Institute

Imagine that you are a fish - exothermic and thus unable to regulate your own body temperature - and the contingent foibles of natural history have all conspired to leave you and your kind in the frigid oceans of the Antarctic just as they are beginning to reach the freezing point (10-14 million years ago).

You like the cold and are well adapted for it, but these temperatures are beginning to give even you - a master of the cold - the icthy chills.

Now imagine that the hands of mother nature have given you the tools to change your own genetic code, and thus your nature, allowing you to make yourself even more suited for waters that are 2 degrees celsius below the freezing point of pure water.

What would you do? Would you inject your DNA with a molecular antifreeze? That seems like a reasonable addition - one we will get to momentarily.

But if you were a genius of bioengineering would you reach out a molecular scalpel and hack away the genes that allow the production of red blood cells, hemoglobin, and myoglobin, leaving only molecular fossils behind?

Icefish Larva

Icefish Larva © Uwe Kils

It doesn't seem like a particularly well thought out plan. But then again, neither you, the fish, nor mother nature are genius bioengineers. Fortunately for life, the forces of evolution still manage to get the job done, however sloppy the end results (yes, technically the job is never done - forgive my metaphor wearing thin).

In fact, natural selection performed just such a feat somewhere around 8.5 million years ago in the ancestors of a flock of related species in the Antarctic: the Channichthyidae icefishes (also known as crocodile icefishes or white-blooded fishes).

As we all know, liquids tend to become more viscous in the cold. Just compare maple syrup before and after refrigeration. Blood viscosity would have no doubt been an issue in the ancient ice fish ancestors, or at least one that could be improved upon. Normal vertebrate blood is filled with big, round, and red blood cells coursing through the blood vessels. Now imagine lowering the temperature of the blood below the normal freezing point of water - that's bound to create some significant resistance.

But aren't erythrocytes critical for carrying oxygen? How could an organism just dispense with them completely? As many scientists know, one of the great things about really cold water is that it can be packed with oxygen. Such is the case with the waters of the Southern Ocean, which are saturated with oxygen.

Thus, it seems that at some point, the icefish ancestors developed mutations in the pathways that result in red blood cell production. Furthermore, the species eventually acquired a deletion in the key genes of red blood cells: the alpha and beta hemoglobin genes. No longer could this fish produce hemoglobin.

As is often the case with evolution through loss of gene function, the deletion wasn't perfect. Almost all vertebrates have both hemoglobin genes lying next to each other within the genome. In most Channichthyidae icefishes, the beta hemoglobin gene has been completely deleted, along with all but the truncated end of the alpha hemoglobin gene (interestingly, these fish have lost their myoglobin gene as well)1. To quote the original paper by Near et al.:

"Despite the costs associated with loss of hemoglobin and myoglobin in icefishes, the chronically cold and oxygen-saturated waters of the Southern Ocean provided an environment in which vertebrate species could flourish without oxygen-binding proteins."

The upshot of all this is that the icefish has completely clear blood lacking in any erythrocytes - and they are the only species of vertebrates to have such a trait.

Normal 2 globin genes vs. lost icefish globins - modified from Near et al 2006

Normal two hemoglobin genes vs. lost icefish hemoglobins - cropped figure from Near et al 2006

Of course, a few other supporting traits evolved as well. Their hearts are significantly larger than other fish hearts, and they pump 4 to 5 times larger volume of blood per stroke2. Their capillary beds have become much more dense as well to make sure all their tissues get adequate oxygenation. Of course, like amphibians that breathe through their skin, with the loss of red blood cells, those that were better able to absorb oxygen tended to outperform their cohorts. Thus they became scaleless as well.

As if these adaptive feats weren't cool enough (pun intended), the antarctic icefishes have evolved their own antifreeze as well3,4. What's amazing about this antifreeze (an Antifreeze Glycoprotein - or "AFGP") is that it represents one clear cut case in which a gene with a specific function has evolved into a separate gene used for a completely different function in a novel way. In the case of the icefish, the ancestral gene was a trypsinogen (a pancreatic digestive enzyme), which has been mutated and co-opted to be secreted and distributed throughout the body to act as an antifreeze. Specifically (for you biologists out there), the 5' secretory signal and 3' UTR sequences of trypsinogen were tacked onto an amplified nine nucleotide sequence from within the trypsinogen precursor to create the novel antifreeze peptide.

So here we have in the icefish's adaptation to the cold, at least one case of de novo creation of a novel gene with a new function from an old gene, as well as the loss of two other genes that have left genomic fossils behind to whither in the weathers of time.

It may not be the cleanest or best engineered solution to the problem of living in an Antarctic Hell (or perhaps Heaven from the perspective of the fish), but this messiness of evolution is precisely what makes it so incredibly beautiful.

References

  1. Near T.J., Parker S.K.,  Detrich H.W. A genomic fossil reveals key steps in hemoglobin loss by the Antarctic icefishes. Molecular Biology and Evolution, v.23, 2006, p. 2008 - 2016.
  2. William C. Aird. Endothelial biomedicine. Edition: illustrated. Published by Cambridge University Press, 2007
  3. Chen L., DeVries A.L., Cheng C-H. C. Evolution of antifreeze glycoprotein gene from a trypsinogen gene in Antarctic notothenioid?fish. PNAS, April 15, 1997 vol. 94 no. 8 3811-3816
  4. Chen L., DeVries A.L., Cheng C-H. C. Convergent evolution of antifreeze glycoproteins in Antarctic notothenioid fish and Arctic?cod. PNAS, April 15, 1997 vol. 94 no. 8 3817-3822
  5. Top image © Dr Julian Gutt and Alfred Wegener Institute
  6. Icefish larval image by Uwe Kils

Previous Adaptations of the Week:

  1. Timber Rattlesnake Camoflage
  2. The Aye-Aye’s Freaky Finger (I’ve Been Cursed by an Aye-Aye!)
  3. Flatfish Eyes & Recapitulation Theory
  4. Bird/Crocodile Symbiosis?
  5. Insect Dorsal Ocelli
23Mar/09Off

Fossil Challenge #1 – Marine Carboniferous Invertebrates from the Ozarks

I am a fossil collector.

Ever since I was a small child I have been collecting fossils.  In fact, I can trace my own fascination with biology directly to my discovery that the very house in which I lived (actually a trailer back then), was set upon land literally made of these long dead and formerly ocean-dwelling ancestors and distant cousins. I'll never forget the awe that crept into my little brain as I tried to imagine enormous oceans covering my forested Ozark mountains.

When I was very young, my Mamaw (paternal grandmother) gave me a simple large toolbox for Christmas - a toolbox with a myriad little compartments intended for the sole purpose of housing my growing "rock collection."

For years I filled this box and a couple more with fossils, rocks, gems, shed snake skins, feathers, arrowheads, seashells, and all manner of relatively non-decomposable animal and plant remains - almost all of which I found myself.

The time came when I was not content to let my collection sit in toolboxes in a closet. Thus I built a shadowbox coffee table during graduate school (with super thick glass so my cats could leap onto it from 10 feet away without smashing my fossils...er...the glass and themselves). Now my collection fills my coffee table and almost every bookshelf in my home.

Shadowbox Coffee Table

Shadowbox Coffee Table (click for larger)

Coffee Table Fossil Collection (& other stuff - click for larger)

Coffee Table Fossil Collection (& other stuff - click for larger)

Coffee Table Fossils

Coffee Table Fossils (& other stuff - click for larger)

I've amassed a decent collection - I'm proud of it anyway, though any paleontologist or geologist would almost certainly laugh at it. Most of them are simple ocean invertebrates, as most of them came from Carboniferous Period limestone of the Ozark Mountains (the entire region is pretty much made of pure crinoids).

All of the above being said, I'm a bit ashamed to admit that I don't know that much about many of my fossils.

Thus, I am starting this series of posts to catalog my entire collection and to see what the experts out there can teach me and all of us about some of our long lost branches of life. Please, if you can add any information whatsoever, it would be much appreciated - i.e. taxonomy, factoids, comments, conjecture, anything. And please point out if I have identified anything incorrectly - a very real possibility.

For this first installment, I am going to begin with my most recent additions - all found this weekend in Bella Vista, Arkansas where I returned for my mom's wedding.

A hat tip goes out to my four nieces (ages 9 to 12) for helping me find them.

Location: Bella Vista, Benton County, Arkansas

Bella Vista, AR fossil site (within 20 meters). Click to go to Google Maps version.

Bella Vista, AR fossil site (within 30 meters). Click to go to Google Maps version. Fossils found mostly in gravel uplifted by roots at the bases of trees.

Fossils

What I know: based on my limited understanding of the region's geology, these rocks are primarily limestone from the carboniferous period (and I believe they are towards the boundary between Pennsylvanian and Mississippian - but I could easily be wrong. I know very very little about geology).

Note: You can click on all images for higher res/quality images. These are highly compressed for bandwidth. I've tried to give multiple views of each fossil.

#1 - Crinoid

Lateral view of the inside of a crinoid.

Lateral view of the inside of a crinoid

#2 - Productid Brachiopod - Order Strophomenida

Update: information provided by Chris Nedin, of Ediacaran: "looks like a productid brachiopod. Order Strophomenida, Suborder Productidina. They can be distinguished by being large, very rounded, with a thick, heavy shell, and along the top, a very straight hinge line, with almost nothing appearing above the hinge line. An example is here at image 408."

Cool unknown mollusc shell

Productid Brachiopod

Cool unknown shell

Productid Brachiopod

Cool unknown shell - view of hinge

Productid Brachiopod - view of hinge

#3 - Spirifid Brachiopod - Order Spiriferida

Update: information provided by Chris Nedin, of Ediacaran: "an internal mold of a spirifid brachiopod, Spiriferida, Suborder Spirifieridina. The shell has been filled with sediment and that has hardened. Then the original shell has dissolved away, leaving the sediment inside, which is what you see. The shape is caused because the shell tapers down to a point away from the centre, and curls somewhat. An example is here."

Unknown shell - top

Spirifid Brachiopod - top

Unknown shell - side

Spirifid Brachiopod - side (previous remark: "What the hell is this thing?!")

Unknown shell- side

Spirifid Brachiopod - side

#4 - Rhynchonellid Brachiopod

Update: information provided by Chris Nedin, of Ediacaran: "I think the brachiopod here is a rhynchonellid. Order rhynchonellidida. An example is here."

Variety of brachiopod shells, crinoids, and coral

Rhynchonellid Brachiopods, crinoids, and coral.

Variety of brachiopod shells, crinoids, and coral

Rhynchonellid Brachiopods, crinoids, and coral.

#5 - Spirifid Brachiopod

Update: information provided by Chris Nedin, of Ediacaran: "another spirifid, this time weathered (see the spirifid link above)."

Brachiopod shell

Spirifid Brachiopod

Brachiopod shell

Spirifid Brachiopod

Brachiopod shell

Spirifid Brachiopod

#6 - Crinoid

Crinoid disc impression

Crinoid disc impression (and some tiny disc interiors)

Crinoid disc impression

Crinoid disc impression (and some tiny disc interiors)

#7 - Possible Spirifid Brachiopod

Update: information provided by Chris Nedin, of Ediacaran: "not sure, maybe another spirifid."

Unknown shell - top

Possible Spirifid Brachiopod - top

Unknown shell - top

Possible Spirifid Brachiopod - top

Unknown shell - underside

Possible Spirifid Brachiopod - underside

#8 - Shelly strata

Cross section of shelly strata

I just like this rock because you can see the shells and strata through cross section

Cross section of shelly strata

I just like this rock because you can see the shells and strata through cross section

I know - these aren't exactly impressive specimens. However, I already had them unpacked and laid out so I figured I'd start with these. I definitely have some other cool ones to come in future posts.

If you know of any fossil aficionados, please send them this way, as I would really like to know at least a little bit more about my collection. If any of you end up being particular helpful, I may just send you one of my awesome limestone rocks made of pure crinoid discs (they're much cooler than those above), assuming you don't already have some or consider them too bland :)

19Mar/09Off

Great Darwin Beard Challenge – Week 4 – The Mugshots

Alright, so Kevin at Deep-Sea News got a little busy this past week "laying down the hardwood." He claims this involved flooring installation...

Thus I have taken on the reigns of presenting this week's Great Darwin Beard Challenge images.

For those of you new here (and I know there are several due to my Science Blogging: The Future of Science Communication & Why You Should be a Part of it), check out the links at the bottom for previous installments. The short of it: from Darwin's birthday in February to the anniversary of the Origin of Species in October, we are competing for the title of "Most Darwinesque Beard."

Each week, we generally have some theme for the images, mainly just to keep ourselves entertained and distract us from the itchiness and rejections from our significant others.

Kevin's instructions this week were to take "mugshots. Try to look as criminally insane as possible."

Great Darwin Beard Challenge - Week 4

Great Darwin Beard Challenge - Week 4 (click for larger)

Participants: Andrew, the Southern Fried Scientist of Southern Fried Science, Kevin of Deep-Sea News and The Other 95%, Me, David "WhySharksMatter" also of Southern Fried Science, and David2 marine graduate student without a blog.

Personally, I think that I win the "criminally insane" look. David1 definitely has the "mentally challenged" look going for him. Andrew just looks guilty and perhaps drugged. Kevin and David2 both have the "yeah - I did it - whatcha gonna do about it" look.

Next week will be hosted by David at Southern Fried Science. Thereafter, we will be moving to biweekly updates of the contest. Technically, we are in Week 5 right now - these images are from last week.

Great Darwin Beard Challenge History:

18Mar/09Off

Developmental Biologists Online

Remarkable Creatures

Remarkable Creatures: Epic Adventures in the Search for the Origin of Species

Just a couple of quick notes to my fellow developmental biologists out there:

First, due to my recent post, Science Blogging: The Future of Science Communication & Why You Should be a Part of it, I was reminded through my comments at Larry Moran's reaction post at Sandwalk that I haven't met very many developmental biologist bloggers out there.

In fact, there is only one dedicated developmental bio blogger I've found: the superb Hoxful Monsters by Nagraj Sambrani. His blog is written for scientists - and if you care about the nitty gritty details of development and evo-devo, his is a blog you should not miss. (Yes I know PZ of Pharyngula is a developmental biologist and posts on the subject as well - but I think he has "evolved" well beyond being developmental-centered - feel free to disagree)

But there must be at least a few more out there, right? If there are, please let me know.

Second, I recently started listening to Scientific American's "Science Talk" podcasts again on my long drive to work. In the February 28th episode, there's an incredibly fascinating interview with one of the premier evo-devo researchers, Dr. Sean Carroll, in which he talks about his new book, Remarkable Creatures: Epic Adventures in the Search for the Origin of Species. This is one book I will definitely be picking up with due haste.

I highly recommned the podcasts as well.

17Mar/09Off

Science Blogging: The Future of Science Communication & Why You Should be a Part of it

sciencebloggingOver the past few years, a new development has arisen in the world of science amongst those who wish to purvey the wonders of reality to the general public.

I'm speaking of course about the ascension of the Science Blog.

Many articles have been written on the burgeoning importance of science blogs for the processing and dissemination of scientific knowledge (see references at the bottom of this post). Conferences have been held, letters in scientific journals have been published, and a myriad online conversations have occurred through social media outlets such as twitter and friendfeed.

Despite all that, there still exists an incredibly large and significant portion of the science population that remains unaware of the existence of science blogs, of the vast amounts of knowledge to be gained from following them, and of the potential career advantages obtained from writing a science blog.

It is for this reason that I was recently asked by Dr. Paul Medina, Science Education and Outreach Coordinator of the University of North Carolina's Training Initiative in Biomedical and Biological Sciences (TIBBS), to write an article on the subject for the TIBBS Newsletter. As such, the primary target audience of this article are the biology graduate students who have yet to learn of the power of the science blog, though it is equally applicable to any and all with an interest in science. If you are arriving at this post by way of the newsletter, I welcome you and encourage you to look around this blog as well as the many other excellent blogs in my blogroll.

What is a Science Blog?

A science blog is just that: a personal web log containing posts written by the author (or sometimes multiple authors) on whatever happens to catch their fancy - usually with a high percentage of posts on scientific topics. Many science blogs are focused on very specific aspects of science - often on the field of the author's expertise. Others are more general, consisting of a wide range of scientific news items, issues, or topics. Some are written with the lay public in mind, while others are written for other scientists, detailing the esoteric minutia of a particular subject.

Science blogs in general have the following qualities:

  • Written by people passionate about science and their topic of choice
  • Written by people very knowledgeable in science
  • Often written by people intimately involved in scientific research

Science bloggers run the gamut of career levels, from lay people with a strong interest in science to teachers, graduate students, postdocs, and an increasing number of principal investigators.

Why you should follow science blogs

1. To keep up to date on fascinating research

Every single day, the world of science is filled with new findings. The scientific journals overflow with exciting new facets into the nature of existence. How is one to wade through it all to remain up to date on the most pertinent or meaningful studies? Obviously, reading the primary literature in your field is of prime importance. But it's quite easy to miss important or interesting work by relying on journals alone. This is particularly true if your interests drive you to cast a wider net. Of course, the mainstream media and sites like LiveScience and ScienceDaily will give you a lot of the headline-making stories - usually those of the highest emotional impact to the public at large.

However, much gets left out of the media - leaving an ocean of wonder beneath the waves of data. Science blogs serve as a great filter - often the best distillation medium around - to sift through it all and pull out the most intriguing and highest impact research of the day.

One of the best ways to sift through the massive amounts of daily research is to follow ResearchBlogging.org, which collates only those blog posts that deal directly with the primary literature. It is conveniently categorized so that you can follow whatever field you wish. I have little doubt that this site will represent a huge part of the science blogging, journalism, and communication future.

2. Join in the great discussion

One of the biggest advantages of the science blog as a medium of information dissemination is its focus on reader interaction and discussion. This is usually done through the "comments" section of a particular blog post. However, the conversation often evolves into multiple posts across the blogosphere - all cross-referencing and interacting with each other, generating multiple discussions in the process. Instead of being a passive receiver of scientific knowledge, commenters become an integral part of society's processing of said information, discussing and debating its implications and relevance.

3. Science blogs allow you to talk about science in an informal setting

Most science bloggers would probably tell you that the online science community has become much like a never ending 24/7 hop down to the pub (sometimes minus the ethanolic beverages - but not always). The vast majority of science blog posts aren't academic treatises. Certainly, many of them are - when that is the author's intent. However, many of the most entertaining science blogs often begin with the kind of statements you might hear among a group of scientists huddled around a pitcher of drought beer in your local dive bar. Though usually done with a little bit more literary style, they often start with something in the way of "So today I read one of most freaking cool things I've ever read..." Alternatively, science blog posts often begin with the theme "You know what I learned today that really sucks?..." This is particularly true of the blogs that deal with conservation issues or the status of evolutionary understanding in the U.S. (a daily subject of biology blogger consternation).

No community exists without its share of large egos. But by and large, I've found that in the science blogging community, pretense is often dropped in lieu of thoughtful and meaningful conversation (though I'm sure many would argue with this). Most of us science bloggers are in this for one reason: we love science and we love talking about it even more.

4. Gain emotional and social support from like-minded people

Whether you're a student, a post-doc, or a principal investigator, you've most assuredly learned that science is hard. One of greatest thing about science blogs is that they are the personal expressions and opinions of the blogger. As such, you will often read posts dealing with current issues and hardships of existing in the academic world. Trials, tribulations, frustrations - they are all on display in the blogosphere. It's much easier to keep yourself sane when reading of your favorite author's own similar experiences. I personally know of several P.I.s who follow blogs for the specific purpose of commiserating on the difficulties of being a scientist/academic in today's world.

The science blogosphere is a true community.  In many respects, being a part of this community has become one of the most rewarding experiences I've had in science. I'll speak more on this in the next section on why you should be a science blogger.

Why you should start a science blog

1. Share your passion for science

Chances are, if you are involved in the daily duties of discovering the mechanisms of nature, you're probably in it because you love it. There's nothing quite like publishing one's own research in peer-reviewed journals. However, unless you're a powerhouse you probably spend many months or years between those publications grinding away at the bench or in the field, with few other chances to share your love with the world at large. Blogs are an excellent way to continuously maintain a presence within the science community and to contribute to scientific thought, whether you write on interesting facts you've learned or dive deep into distilling the current primary literature.

2. Be a part of the community

I've found few communities quite like that of the science bloggers. We are nerds and proud of it. We care deeply about all aspects of science, with particular interest in bringing it to the people. From the first day of becoming a part of this community, you can rest easy knowing that have just entered a virtual world full of people that are like you in many respects. And of course, to make your blog succeed you must find readers. The main method of finding people who care about what you have to say is to become an active member of the community. This means that you visit your friends' online homes often and join in their conversations. Before long, they will begin to come to your virtual house to palaver. The science blogging community is a multi-threaded, never-ending science party.

When not interacting through blogs, you can always find conversations occurring on Friendfeed. If you are a biologist, the first place to start is to join the Life Scientists room (which currently has 667 members). Also, a daily-growing number of science researchers, teachers, bloggers, and journalists use twitter (start by "following" the science enthusiasts on this list maintained by David Bradley - @sciencebase).

By now you might have gotten the impression that the online science blogging community is relegated to the virtual realm alone. In reality, I owe most of my readership and my connections within the community to a real world event: the wonderful ScienceOnline09 conference. That's right - there's an entire conference dedicated to science blogging, writing, journalism, and education through online media. And the kicker for you folks from UNC is that it is held annually right here in Research Triangle Park. I know for a fact that the organizers Bora Zivkovic (A Blog Around the Clock), Anton Zuiker (mistersugar), and David Kroll (BRITE) have already begun the orchestration for ScienceOnline10. So be sure to sign up once registration opens. Not only will you learn of a slew of new developments in the world of online science, you may just get to join the rowdy ocean bloggers in another round of sea shantying.

Ocean Bloggers at ScienceOnline09

Ocean Bloggers at ScienceOnline09

3. Make connections

You've hopefully learned by now that science, like every other aspect of life, is much more rewarding when you've formed a good network. Just over the past few months, I've met more scientists in a wider variety of fields through my blogging than through an equal amount of time in the science community of the "real world." Again, the point must be hammered that these connections are very real connections, and often become much more personal through the informal nature of interacting in a blog setting. There exists the real possibility, as I have learned, that these connections may just aid you in your future career endeavors, despite what some skeptics may say.

4. Be a part of "the good fight"

I took the above reason from fellow science blogger, GrrlScientist of Living the Scientific Life and member of one of the most popular blogging communities, ScienceBlogs.

It's no secret that the science community is in a seemingly never-ending battle with those who wish to push ignorance upon this and future generations. Within the science blogging community runs a thick vein of pro-science activism. That is why we do this after all - to share our passion and knowledge with the rest of the world.

When you become a member of the community, you can be sure that should some insane legislation enter the pipelines or an inane campaign begin, you will hear about it through the blogs. It's all the more reassuring to know that when your blood begins to boil, a cadre of people spread around the globe are sharing in your frustration. And often times, this can lead to organized action.

5. Become a better writer

We all know the importance of having excellent writing skills. Writing is how we obtain funding and how we display our research findings to the world - and it largely represents our main metric of success. Writing a science blog is one sure way to keep those typing fingers sharp and your mind nimble, and vice versa.

6. Hone your ability to distill complex research into understandable terms

The vast majority of science blogs cater to a wider audience than just those individuals directly involved in similar research. As such, it's critical to explain yourself well without filling your articles with needless jargon. Not only will this make you a better writer, but it will make you better able at explaining exactly why you deserve the taxpayers' hard-earned money, and why your research might make a difference to this world. It will also vastly increase your ability to teach these same concepts.

7. Showcase your dedication to science and your interest in outreach

Though some science bloggers have managed to find a way to do this for a living, most of us do this as a hobby in our spare time. Blogging can take as much or as little time that you desire, but regardless of the amount of effort you put into your science blog, it can always serve as a tangible (virtual) accomplishment you can point to and say "see this? These are the things I am interested in as a person. This is how much I love science." Make no mistake, science blogging is real outreach. I can't count the number of hits I've recieved on this site that were obviously children doing a little bit of research. Not to mention the fact that I somehow managed to reach you.

8. Get feedback on your own thoughts and/or research

Do you ever have a science-related question and wish that you could just shout out for someone to answer it? Google works - sometimes - but it's nothing compared to the value of information you get directly from someone with relevant experience. Just a few days ago I needed information on a Green Fluorescent Protein variant antibody. I shouted the question to my blogger buddies through twitter and 2 minutes later I had my answer.

Again, a science blog is a collection of conversations - conversations that often lead to insightful changes in your own opinions and thoughts.

9. Blogs are great teaching tools both inside and outside the classroom

If you are a teacher, you might be interested to know that there is a growing trend among some of the best teachers to use blogs and similar social media-like online sites as tools to supplement the classroom (see Nings in Education). One of the pioneers in using blogs as an instructional tool is the excellent MissBaker. I had the honor of meeting MissBaker and some of her students at the ScienceOnline09 conference, and I can tell you that she is always willing to give advice to fellow teachers on using these tools.

10. Increase the visibility of yourself, your lab, your department, and your University

There is a growing push to get institutions, departments, and individual labs more involved in the online science communication. Let's face it - the world is online. Our kids learn, chat, and meet online. They practically run their lives through the internet. Science blogs are an excellent way to keep the world informed of your own research interests and to showcase what you've accomplished. We academics are often criticized for living in our ivory towers. Through science blogs you can reach out directly to the public, without having to worry about unreliable media intermediaries. If you are a principal investigator, I highly recommend that you read University professors turn to the blogosphere, for classes and recognition

11. Have fun

Oh yes, writing a science blog and following your favorite blogger colleagues is loads of fun. It was through this blog that I met Kevin Zelnio (Deep-Sea News), Andrew the Southern Fried Scientist, and David "WhySharksMatter" (both of Southern Fried Science). Beginning on February 12th - Darwin's 200th birthday - we began a competition - The Great Darwin Beard Challenge. The competition will end on October 1st - the 150th anniversary of The Origin of Species - at which time we will see who has grown the most darwinesque beard (check back for weekly updates and photos).

If that's not fun, I don't know what is!

It's okay - you can say I don't know what fun is.

Why science blogs will be a major component of the future of science communication

The science blogging community is far from free of heated debates. One such debate that extends to the larger world of journalism in general is exactly what place blogs should have in disseminating knowledge to the public.

I know I'm not alone in my own thoughts, though there are many that would disagree with what I'm about to say.

I believe that by-and-large, science bloggers are in the process of making many science journalists, at least as we know them now, obsolete. That is not to say that blogging can or should replace journalism (a hot debate these days), but good science journalism will need to evolve as it becomes complemented by the growing community of science blogs.

Let me first say that there will always be a strong demand for and great value in excellent science journalists and writers. I'm talking about the Olivia Judsons and Carl Zimmers of the world. Let me also state that I am not an expert on journalism or the media. These are my own opinions, though reasonably well-informed they are.

By "science journalists," I'm only talking about those people who are primarily journalists - writers - that do not necessarily have a strong background in science, and that certainly don't have in-depth training on the topics they report on.

So why do I think this specific breed of journalist is being made obsolete? The main role of the science journalist, as I see it, is to serve as an intermediary between the stereotypical "socially inept, egghead" scientist and the public. They package the scientists' findings into neat little stories that everyone can understand, using a few quotes from the scientist to humanize the data. Many of them are quite good at what they do - and adeptly able to grasp complex concepts and boil them down for the layperson.

However, with the rise of the science blogger, intermediaries are becoming largely unnecessary.

One of the critiques often made by traditional journalists of bloggers in general is that bloggers "don't have the training to research a subject." You can clearly see that this critique doesn't fit the science blogger. In fact, there is no one better able to do the appropriate research on a science topic than those intimately involved in similar research.

A second common claim is that "scientists and bloggers aren't good writers. They don't understand the concept of a 'story'." There are certainly scientists who can't write for a general audience. And there are plenty of bad bloggers. However, there are also plenty of really bad journalists. There is now a huge and growing number of science bloggers who are truly superb writers (Note: I don't consider myself one of these. I am still very much in the learning phase). Check out Ed Yong of Not Exactly Rocket Science for one great example. Saying that scientists are bad writers is a bit like saying that journalists are terrible drivers.  Most scientists owe their very existence (i.e. funding) to their ability to write well and convincingly and many of them are quite good at turning their research into a story.

Chances are good that some of you will end up taking up science blogging. As the number of science bloggers grows, so too does the cache of potentially excellent writers who also have the expertise to break down the scientific data itself. The more of us there are, the better we all get at our craft, feeding off the successes of each other.

The cream will always float to the top. Again, I know little to nothing of the economics of science journalism, but it is quite clear that the science blogging community will at minimum raise the bar for journalists covering scientific research. Thus, I see no end in the growth of the science blog as a meaningful and personal medium for the dissemination of scientific knowledge to the public who funds it.

Will you be a part the revolution?

So you've decided to start a science blog...where do you start?

Blog Networks

More reading

To those of you already blogging science

Please feel free to add your own comments below. I will likely update this post. I seriously doubt that I managed to catch all the great reasons to blog. Also feel free to point out any errors or omissions.